\name{applyIgnoreList}
\alias{applyIgnoreList}
\title{remove all input data sets that are in the ignorelist.}
\usage{applyIgnoreList(inputData, ignoreList)}
\description{remove all input data sets that are in the ignorelist.}
\details{Used to ignore certain input data sets that were flagged in previous analysis steps.}
\arguments{\item{inputData}{the set of input data that was defined in the protocolApplication.}
\item{ignoreList}{list of filenames that should be ignored}}
